Convert your workflow for containerized use
This section will step through the process of converting a set of command-line commands, that you would normally run one at a time, into a script that can be generalized and incorporated into a container image.
Finalize your command list will go over the example list of commands this tutorial will use and put the commands into a single text file to work with.
Run your workflow on organized data will cover setting up a test directory structure with an initial test dataset in it. Then it will go over how to use that setup to test your commands.
Create a simple script file will go over creating a script file that you can run from your test directory structure and produce the same outcome as running your commands one-by-one.
Incorporate variables into your script will look at starting to abstract away the inputs that are specific to your test dataset, and starting to generalize things for use on other data.
Incorporate command-line inputs will finish generalizing your script so it can run from a command-line command on any input data you point it to.